Metabolomics Analysis Tools

See below for analysis tools including different online tool suites, R packages and other downloadable programs


apLCMS–adaptive processing of high-resolution LC/MS raw data to generate feature table

xMSanalyzer–automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data

ComBat–batch-effect correction if identified via Principle Components Analysis

xmsPANDA–targeted and untargeted MWAS (to be released)

MetaboAnalyst–online tool suite for metabolomics data analysis including statistical, time-series, and biomarker analysis

MetabNet–network analysis tool

Mummichog–pathway and network analysis for high-throughput metabolomics

Photo credit by photokanok

Photo credit by photokanok

METLIN–annotation of metabolites and prediction tool for known metabolites

MetaCore–data mining and pathway analysis (purchase necessary)

DeconMSn–MS/MS validation and deconvolution

MassBank–metabolite prediction tool based on MS/MS for both known and unknown features