Metabolomics Analysis Tools

See below for analysis tools including different online tool suites, R packages and other downloadable programs

apLCMS–adaptive processing of high-resolution LC/MS raw data to generate feature table

xMSanalyzer–automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data

ComBat–batch-effect correction if identified via Principle Components Analysis

• Multiple R packages contain the methods of ComBat as described in Johnson et al. 2007 Biostatistics

xmsPANDA–targeted and untargeted MWAS (to be released)

MetaboAnalyst–online tool suite for metabolomics data analysis including statistical, time-series, and biomarker analysis

MetabNet–network analysis tool

Mummichog–pathway and network analysis for high-throughput metabolomics

Photo credit freedigitalphotos.net by photokanok

METLIN–annotation of metabolites and prediction tool for known metabolites

MetaCore–data mining and pathway analysis (purchase necessary)

DeconMSn–MS/MS validation and deconvolution

MassBank–metabolite prediction tool based on MS/MS for both known and unknown features